'The Independent' Sparrow Prize

On 16 May 2000 the British daily newspaper, 'The Independent,' launched a £5,000 prize competition for:
"a peer-reviewed paper in a scientific journal which, in the opinion of our referees - The Royal Society for the Protection of Birds (RSPB), the British Trust for Ornithology (BTO), and the sparrow expert Denis Summers-Smith - explains the house sparrow's recent precipitous decline, especially in towns and cities."
There have now been three entries to the competition, two of which are the papers published by me in 'The Auk' in 2010 and International Studies on Sparrows in 2011 (see 'Publications' in the sidebar). The third is a paper by Will Peach of the RSPB, which was published in 2008 in the journal 'Animal Conservation.' The latter was recommended for the prize by one judge, for half the prize by a second judge, and rejected by a third, and so was deemed not to have fulfilled the criteria. Both of my articles were unanimously rejected by the judges.
 
The reasons given by the RSPB and BTO judges, respectively Dr David Gibbons and Dr Rob Robinson, for rejecting the Auk paper are set out below, along with my responses and their subsequent rejoinders. Reasons for rejecting the International Studies on Sparrows paper by Dr Gibbons, Dr Robinson, and Dr Denis Summers-Smith, along with my point-by-point rebuttals, are set out on pages linked as follows:





Response forwarded to the RSPB 17/5/10

posted 16 May 2010 16:24 by Christopher Paul Bell   [ updated 16 May 2010 16:28 ]

1. I do not criticise the Hole paper for its brevity, but for omitting the method. The method used in our paper is set out in full, and can be judged or replicated by anyone who wishes to do so. Your allegation of inconsistency therefore rings hollow. We approached the problem using a rigorous hypothetico-deductive framework, deriving a range of improbable predictions from our hypothesis, which were then vindicated by the analysis. Hole seems to have failed to do this, since the predicted/observed improvement in over-winter survival following food supplementation is not unique to the hypothesis of winter food limitation. In answer to your question, I consider a well-designed correlative study to be ‘more powerful and reliable’ than a poorly designed experimental study.

 

The Peach study deduced lower than replacement level productivity in two out of three years, though one of the two was based on a sample of only 19 nests, as against 92 and 147. Even if we accept the validity of estimates for all three years this is hardly a startling result, since given the assumption that productivity falls below replacement in half of all years, there is a 3 in 8 chance that it will fall below twice in a run of three. The previous studies referred to did not show consistently higher success, since the second lowest fledgling productivity quoted was that of Seel from the early 1960s. The discussion flirts with the idea that pollution has caused insect decline, but the study failed to find any relationship between aphid density and NO2, and is reduced to citing studies showing higher insect densities near roads in justification of the idea that emissions ‘affect’ insect abundance. As I said before, the only notable finding emerging from the study is that aphid/nestling survival correlation, which supports the trivial deduction of food-limited breeding success.

 

I am glad we have established that the basis of your argument in relation to brood size is something you once saw on the BTO website. However, the fact remains that brood size did not decline during the period of population decline. The fledgling productivity graph you refer to shows a period of high productivity in the early 1990s, which Peach showed to be a function of warm dry summers with a subsequent decline following a return to cooler, wetter summers.

 

With regard to possible ‘confounding effects’, you have not cited any species that could compete for nesting sites, and I take it you now accept that this is not credible. You mention Woodpigeon, Collared Dove and Greenfinch, but competition with these species can only explain the observed patterns if the spatio-temporal pattern of their increase proceeded in parallel with that of the Sparrowhawk. The spread of the Collared Dove has proceeded in the opposite direction from that of the Sparrowhawk, and the Greenfinch underwent a decline from the mid-1970s to the mid-80s which is very similar to that in rural House Sparrows. I’m not aware of any data indicating that Woodpigeon increase has proceeded from north-west to south-east.

 

2. You are justified in your scepticism about the urban trends in zones 1 and 4 – we have made no secret of the small data sets for these contingencies. However, your complaint refers to urban zones 2 & 3 for which there is adequate data. You are looking at the wrong section in table 1 when you cite significant differences, which occur between rural sites. For urban sites slope is marginally significant, but the effect size is small. Further down the table you will see that there are significant differences between urban and rural sites for Sparrowhawk incidence in zones 1 and 3, which refute your implied assertion that there is no difference between urban and rural sites, and this is backed up by information in local bird reports across the country.

 

3. You are correct to state that the Newson study is the latest in a long line of publications that have found ‘no evidence’ of predation effects on prey populations. Like the others I believe this to be hopelessly flawed for reasons outside the scope of the present discussion. Suffice to say that I have put my concerns to two of the authors of the Newson study in a face to face meeting in which I received no satisfactory response, and in writing to a third author to which I’ve received no response at all.  

 

Your statement that the Thomson method produces the same result as our method if censored data are used is nonsensical since Thomson did not use censored data. His results would probably have been very different if he had used either our method of defining predator presence, or censored data, or both.

 

You state without justification that the form of the response in sparrow count to the beginning of Sparrowhawk predation at a feeding station is unknown. However, as I mentioned in my rebuttal, the form that would be expected is an instantaneous step-change followed by renewed stability. Your response merely restates your belief that sparrows avoid feeding stations that are being attacked by Sparrowhawks, and you have not answered my question as to why this avoidance would gradually increase over a 15-20 year period after the beginning of Sparrowhawk attacks. To illustrate the absurdity of your position, consider the decline in sparrow count between the periods 10-12 and 13-15 years after the beginning of constant Sparrowhawk presence in Figure 3. None of the sparrows in a typical population will have been alive during a period when Sparrowhawk attacks were not occurring, yet you insist that the halving of Sparrow count at a typical feeding station is a behavioural response to a change experienced by their distant ancestors.

 

Your speculation, backed by no evidence that I’m aware of, that the apparent pattern of decline may reflect a shift of the timing of mortality to early in the winter ignores the fact that our data closely mirror national patterns of population decline derived from CBC data in terms of timing, scale and regional pattern, and that the overall correlation between GBFS and CBC data for House Sparrow is 0.967. I would also point out that the BTO judge has been gracious enough to concede this point after initially holding a position similar to yours.

 

Your breakdown of the deviance values presented in table 2 is not relevant to the issue you raise, since it would clearly be ridiculous to claim that nearly all of the total variance in such a dataset is explained by a variable. The full quote your refer to is “However, both in the case of the spatio-temporal analysis (Figure 2), and the presence-absence analysis (Figure 3), Sparrowhawk incidence explains practically all of the variance in Sparrow numbers”. In other words, the variance referred to is that expressed by the trends shown in figures 2 and 3. In the case of Figure 2, the appendix shows that the residual is <20 for both urban and rural models, which is clearly a small fraction of the summed deviations from the mean of all the fitted values shown. In the case of Figure 3, there is no evidence of decline in the absence of Sparrowhawks, which allows us to reframe the question at hand from ‘what is the cause of sparrow decline’ to ‘what is the cause of this Sparrowhawk-related decline’?  There is no overstatement in either case.

 

The paper was subjected to a lengthy process of criticism and revision at the behest of two independent statisticians during the course of peer review, and all analyses included rigorous model criticism. Table 2 as originally submitted did include deviance values, and an analysis of deviance comparing model 1 with models 2 & 3, but we were instructed to delete this and retain only AIC. From this I deduce that Gurka’s opinion is not as well-known as you claim it to be and/or is not universally shared among statisticians.

 

You raise the small number of urban sites among the 54 used for the PC analysis, but you do not explain why. We performed an analysis of regional and urban/rural variation separately from that of inter-site variation, and I would remind you that sites are separated into urban and rural by an arbitrary dividing line which, if placed differently could have resulted in most sites being classified as ‘urban’.

 

The reason for Sparrow decline prior to the AP transition is the inherent inaccuracy of AP as a measure of Sparrowhawk establishment. For sites with a PC transition, we can be certain that conditions are such as to enable recording of Sparrowhawk every year, so that absence probably means absence.  The AP analysis includes many sites that lack a PC transition. For these sites we cannot be certain that Sparrowhawk will ever be recorded year on year, and so false negatives are much more likely, including for the period prior to AP transition, which is why Sparrows decline during this phase.

 

Finally, there is no basis for your allegation that I am “reluctant to acknowledge evidence (or consider alternative hypotheses) that run contrary to my favoured hypothesis”. As is evident from the comments above, and from my previous contribution to this discussion, I have taken every opportunity to examine alternative hypotheses and have set out arguments as to why I believe the evidence presented in their favour is inadequate. If you disagree you would be better served by arguing ad rem rather than engaging in the very behaviour which you have, without justification, ascribed to me and characterised as ‘deeply insulting’.

 

Rejoinder forwarded by the RSPB on 14/5/10

posted 15 May 2010 06:19 by Christopher Paul Bell   [ updated 16 May 2010 06:41 ]

You state that RSPB will ignore any evidence that does not support its preferred explanation. I find this comment deeply insulting both to the Society, and to me. The RSPB accepts that bird populations can be limited by predation, but believes this is rare for songbirds. You might like to see the report on predation we produced a few years ago, available at: http://www.rspb.org.uk/ourwork/science/predationreport.asp.

 

My comments outlined below have been informed by discussion with several of my colleagues.

 
1.      Possible effects of food. My point here was to highlight your apparent reluctance to acknowledge the full range of evidence available on food limitation. It seems odd that you criticise the Hole paper for its brevity but then use the same rationale to explain your partial account of evidence relating to food limitation. Constraints on manuscript length are particularly onerous in Nature and much more detail on the Hole study is available in Dave Hole’s original DPhil thesis. A great strength of the Hole study is its experimental nature. I am sure you agree that the experimental approach is generally much more powerful and reliable than the correlational approach.

The Peach et al paper did more than establish a link between breeding success and invertebrate availability. It showed that breeding success in a declining population of suburban sparrows was (in 2/3 years) lower than the threshold level expected for population stability (it was only just adequate in the suburban area in the third year). This contrasted with higher rates of breeding success in previous studies on stable populations. The paper went on to consider possible factors that might account for lower than expected breeding success and highlighted invertebrate availability and possibly air pollution.  

The trends in brood sizes from BTO data are updated regularly in reports (e.g. Baillie et al 2007, cited by Peach et al) and online (http://www.bto.org/birdtrends2009/wcrhousp.shtml). Until recently there have been graphs on the BTO web site showing a marked decline in brood size from ca. 3.5 in the late 1980s to about 2.7 by 2003, and BTO have consequently issued nest record alerts. The current web site seems to have replaced brood size by fledglings per attempt (which has also declined markedly since the late 1980s, but is higher than in the 1960s).

My point about possible confounding effects involving other species is a simple one, and highlights a general weakness of your rather narrow (single hypothesis) correlational approach. There have been large increases in the numbers of several common garden birds that might attract hawks to gardens and at the same time have potential negative impacts on house sparrows (e.g. woodpigeons, collared doves and greenfinch are popular hawk prey and might compete for seed food with sparrows or perhaps spread disease).  The Newson approach provides a useful example of how to allow for possible influences of other predators, weather, total prey biomass etc. 

2.      You seem to imply that the GBFS provides a more reliable picture of sparrowhawk colonisation than the Newton & Haas data. I am afraid  I disagree about that, especially considering the very modest numbers of urban gardens involved particularly in zones 1 & 4. You suggest that incidence functions are similar for zones 2 and 3 (Fig 2b) but doesn’t table 1 indicate that these are the only pair of zones to show significantly different trends? (Table 1). Wouldn’t you therefore expect differences in sparrow trends between regions 2 and 3? Yet the sparrow trends are almost identical for these two zones.

3.      The contrast in conclusions between your study and several others (to which we can now add Newson et al, 2010) remains stark. You contest that your improved definition of hawk establishment provides the explanation for these contrasting conclusions, although Newson et al went to great lengths to provide a robust measure of hawk settlement and could detect no impacts on house sparrows. Your point about the Thompson method being potentially misleading seems only to apply to the non-censored data and a poorly fitting model. Both methods give similar results when the few gardens causing poor model fit were excluded. 

Another possible explanation for the different conclusions drawn by you and Newson is the different type data you have used. Your reliance on winter garden counts throws up interpretational caveats that do not apply to the same extent to breeding season data. As you know, sparrows are highly faithful to breeding sites between years but are much more mobile outside of the breeding season and might well avoid localities having high hawk activity. Or, alternatively, may become much less detectable in areas of high hawk activity. You suggest the form of the PC relationship argues against such a behavioural response but the actual form of any such response is unknown. A reduced frequency of usage of gardens with high hawk activity, by a flock/colony of constant size would cause average winter-long counts to fall. More generally, your use of the mean count across 26 weeks raises further problems of interpretation. For example, a decline in the mean count across years might simply reflect a shift in the timing of mortality of sparrows to earlier in the autumn/winter (possibly linked to hawk predation), and may not reflect any overall increase in over-winter mortality or any subsequent reduction in recruitment or local population size.

You seem to overstate the strength of your predictive models when you claim that ‘sparrowhawk incidence explains practically all of the variance in sparrow numbers’. You don’t seem to present the variance statistics for the zonal analyses (and see my comments above about the inconsistencies in trends relating to the urban data), while the hawk variable only accounts for a modest reduction in deviance compared to a temporal trend (after site effects, time accounts for 28% of the remaining deviance while hawk PC accounts for 35%, leaving 65% of the deviance unexplained; Table 3). So compared to the temporal model, the hawk effect only accounts for an additional 7% of the deviance. You don’t seem to have subjected the PC analysis to model criticism and your usage of the AIC to support the PC model ignores well known fundamental objections to the use information theoretic approaches for the comparison of fixed effects within a mixed modelling framework (e.g. Gurka 2006). Your PC analysis is based on only 54 sites which (given the ratio of urban-rural sites in Fig. 1) suggests a very small number of contributing urban sites (perhaps a similar number to that for urban zone 4 which you acknowledge ‘may not provide an accurate summary of the underlying trends’). I am also curious as to why sparrow counts showed large and significant declines several years before the first arrival of the hawk (AP transition in Fig. 3).   

To conclude, I believe your paper constitutes a useful and interesting contribution to the ongoing debate on causes of house sparrow decline. However, I believe you are overstating the strength of the evidence that your analyses / data provide, and you seem to be reluctant to acknowledge evidence (or consider alternative hypotheses) that run contrary to your favoured hypothesis. For this reason, I am not surprised that all three judges advised against the Independent awarding its prize for your paper.

 

Newson S.E., Rexstad Eric A., Baillie, S.R., Buckland S.T. & Aebischer N.J. 2010. Population change of avian predators and grey squirrels in England: is there evidence for an impact on avian prey populations? Journal of Applied Ecology 47, 244-252. 10.1111/j.1365-2664.2010.01771.x

 

Gurka, M.J. (2006. Selecting the best linear mixed model under REML. Am. Stat. 60, 19-26.

Response forwarded to the BTO 16/4/10

posted 16 Apr 2010 01:13 by Christopher Paul Bell   [ updated 16 Apr 2010 01:39 ]

(1) The reason you don’t agree that the absence of the patterns you predict is ‘supremely irrelevant’ is that they arise from your hypothesis and not ours. The fact that the data refute your hypothesis cannot be put forward as a criticism of our paper. We did not bother to test your hypothesis for the very good reason that it is clearly wrong, and based on the following erroneous premises: (i) That the re-occupation of Newton’s four zones by Sparrowhawks happens sequentially and instantaneously, like the switching on of a light; and (ii) that Sparrow populations are at a stable equilibrium before the Sparrowhawks’ arrival. Only these circumstances will fulfil your ‘clear hypothesis of the pattern of decline’ that sparrow trends should be more negative in areas recolonised by Sparrowhawks and occur later in areas recolonised later. However Sparrowhawk recolonisation is not instantaneous, but is occurring at rates that vary both between and within zones throughout the study period, which is why a simulation model is necessary to compare population trends in the two species.

 

(2) You are suggesting it would have been better to try an approach which enabled confidence limits to be applied to P, and better still to develop a model with a range of additional variables to ‘take account of’ other potential explanatory factors. You have outlined your alternative approach in only the vaguest terms (and I would urge you to clarify it), but I suspect that even if predation mortality were the only explanatory variable, it would not emerge as significant, adding yet another example to the litany of studies that have shown ‘no relationship’ between predator and prey numbers.

 

The common characteristic of all such studies is that no relationship emerges because they fail to partition signal from noise. This is why we have taken a different approach that recognises the triviality of trying to assess the significance of P, which can only be zero if Sparrowhawks never kill any Sparrows. We ask, given a value of P<1 and empirically determined values of r and N0, what are the values of K that provide the best fit to each of the eight sparrow trends? We then determine the P that provides the best overall fit, and ask whether this is likely to have occurred by chance.

 

We do not assign a probability because there is no objective means of assigning a reasonable a priori range of variability in sparrow trajectories. However, it is clear that the number of sets of eight Sparrow trajectories that would produce a worse fit than that observed is essentially infinite, but that a very limited range of sets that would produce a better fit, so that there is a minute probability that such a fit could emerge by chance. The modelling approach also captures the biological reality that regional trends are a composite of widely varying trends in individual sites, which I suspect your suggested approach would not.

 

(3) You have fallen into a semantic trap here. Remember this is GBFS data – sites classified as ‘rural’ are merely those in which less than half the surrounding 4km2 is ‘built up.’ All of these data are associated with dwellings, and even those classified as rural show differences on average from CBC data derived from genuinely rural sites. GBFS data both here, and in previous BTO publications show stable Sparrow populations up to the mid-1980s, while CBC data show declines starting in the 1970s (e.g. Siriwardena et al. 2002). By this token all of the data we use are urban. I should also note that the challenge set by the Independent was to ‘explain the House Sparrow’s recent precipitous decline, especially in towns and cities.’

 

(4) One needs to recognise that other variables may be neither important nor quantifiable, and that if they can’t be quantified, as may ultimately be the case with food availability and nest sites, they do not fall within the realm of science. Your position that nothing can be inferred until every conceivable variable has been exhaustively investigated is appropriate if the objective is to generate a ‘need’ for ever more research, but not if it is to find solutions to problems. However you are also inconsistent in the application of your principles. The BTO has never been slow to infer the importance of food availability in Sparrow decline, despite the lack of controls in studies purporting to demonstrate this. In fact there is no evidence that food or nest sites are a factor, and what can be asserted without evidence can also be dismissed without evidence.

 

(5) You have reverted to your original position, which is that GBFS data do indeed provide a good population index for House Sparrow, but you now complain that we do not have sufficient urban sites. Leaving aside both the semantic issue and your misinterpretation of the competition criteria, both discussed at (3), the shortage of ‘urban’ sites only applies to the analysis in relation to PC transition. For the other analyses there is very adequate ‘urban’ representation, as can be determined from Figure 1. If, as you say, this is your major concern, there is no basis for it.

 

We have shown that both the general decline in Sparrow populations, and all of the major variations in the trajectory of this decline, can be satisfactorily explained by Sparrowhawk predation without the need for any additional variables. The fact that ‘other changes’ are happening in the environment does not invalidate this, since despite the huge investment by the BTO and others there is no critical evidence that any of these changes has any relevance. By all established standards of scientific inference, Sparrowhawk predation is the explanation for House Sparrow decline.

Rejoinder forwarded by the BTO on 13/4/10

posted 13 Apr 2010 08:02 by Christopher Paul Bell   [ updated 13 Apr 2010 09:47 ]

(1) "The fact that later declines in rural areas are not "startlingly obvious", or that urban patterns are similar, is therefore supremely irrelevant."

I'm afraid I disagree here, if your theory is correct and the mechanism is important enough then one can generate clear hypotheses regarding the pattern of decline. I find it odd that if it is 'supremely irrelevant' you include it in the paper, but notwithstanding this, I don't think this damns your theory (for some of the reasons you suggest) but it clearly doesn't strongly support it.

(2) "Your position appears to be that our model therefore has too many parameters to be plausible on mathematical grounds, but too few to be realistic on biological grounds. If you apply this consistently, you must surely regard the whole of population biology to be invalid?"

No, you have misunderstood. I would envisage a biological model with sufficient parameters to capture the biology (however many that is), one of which would be the effect of predators, which one could then vary. Thus although one has a model with several parameters, you are focussing in on the single quantity of interest. In your current model you are varying several to fit your pattern, which, as you say, makes it easier to get a fit to the data set.

(3) "You erroneously state that there is no information on 'geographical spread' of the sites in the analysis shown in Figure 3 and Table 3. Though you do not say so clearly, you are attempting to imply that the superiority of PC-centred time over chronological time as an explanatory variable is an artifact of an underlying correlation of PC transitions with an unknown causal factor with an E-W gradient. Your complaint that there is no analysis of urban rural gradient is spurious, since only a handful of the 54 sites with a PC transition were urban, rendering such an analysis meaningless."

The analysis you present in Fig 3 is very interesting and, as I said, quite persuasive, though I think it would be interesting to explore some of the site variation a bit more. The challenge set by the Independent though, was in terms of explaining the decline of urban house sparrows. If you have no (or only a handful) urban sites in your dataset then you can't really do this as it seems quite likely that urban and rural populations are declining for different reasons.
 
(4) "You state that no inferences can be drawn about the effects of Sparrowhawk predation without accounting for variation in nest site and food availability. The difficulty of quantifying these t wo variables means that you effectively insure yourself via this argument from ever having to concede the significance of Sparrowhawk predation. Even if such quantification were possible, you could logically fall back on the need to account for weather, disease, parasites, atmospheric pollution, competitors or any other conceivably relevant variable. Indeed, your position applied consistently would prevent you from ever drawing inferences from any ecological study. "

I disagree. One needs to recognise the importance of other variables and quantyify them where possible, but just because ecology is complex doesn't mean we can't do anything.

(5) "We have performed the analysis suggested by you in the first quote, which comes from a paper discussing the potential causes of Sparrow decline. Why do you now consider the results to be unreliable? When did you resile from the opinion you express in the second quote, and what level of correlation between GBFS and CBC would be required to 'make the link' between numbers in gardens and population size?"

I have no problem with the analysis of GBFS data, providing it is interpreted properly, and I think your analysis of these data does make a useful contribution. I take your point that gbfs and cbc numbers are well correlated and I don't see this as a major flaw. My main concern, in this context, is how few urban sites you have.

I have no problem with the possibility that sparrowhawks might be having an influence on sparrow numbers (indeed I personally think it likely), whether this is the primary cause of the decline is another
question given all the other changes that are happening in our towns and countryside. However, we were asked to comment on your paper in light of the specific question set by the Independent. Whilst it does contain much of interest, I don't think it answers that question for the reasons I outlined.

Rebuttal forwarded to the RSPB 4/4/10

posted 13 Apr 2010 07:52 by Christopher Paul Bell   [ updated 14 Apr 2010 07:39 ]

(1) You assert that our paper is not convincing because other papers have inferred that food shortage is responsible for House Sparrow decline. I should probably note in passing that if you intend to deploy this argument consistently, you will automatically disqualify any entry to the Independent’s competition that fails to support the explanation preferred by the RSPB. You state that a lack of discussion of the food shortage hypothesis is a weakness of the paper. You will also be aware of the demands of journal editors, and we were specifically instructed to remove such discussion to shorten the paper and focus on the results of the analysis. I will therefore take the opportunity here to discuss the studies you have cited.

 

The Hole et al. (2002) paper is difficult to evaluate, since it provides no details whatever on the methodology of the supplementary feeding experiment. The results as presented are of little value, since although they are consistent with the proposition that food shortage caused low survival at University Farm in the winter 1998-9, they are also consistent with the proposition that supplementary feeding in 1999-2000 increased survival by reducing the sparrows’ need to expose themselves to Sparrowhawk predation. The farm is adjacent to Wytham Woods, to which Sparrowhawks returned as a breeder in the interim between the study of Dawson (The breeding biology of the House Sparrow. D.Phil. Thesis, University of Oxford, 1972) and that of Hole, during which the Sparrow population at the farm underwent a marked decline.

 

The Peach et al. (2008) paper demonstrates a relationship between aphid density and breeding success among House Sparrows breeding in nest boxes over three years in Leicester. The only inference that can be drawn from this is that breeding success is limited by food availability, which is a trivial result since this is always the case, no matter if a population is declining, stable, or increasing.  The study therefore tells us nothing about the cause of House Sparrow declines.

 

The trend towards smaller brood sizes derived from nest record cards is presumably that reported in Crick & Siriwardena (2002). Mean brood size estimates are plotted on p 169 of that paper for the years 1976-2000, and range between 2.7 and 3.7. The lowest estimate occurs in the year 2000 at the very end of the data sequence, following a run of three years in which estimates range from 3.2-3.5. The allegedly significant downward trend is therefore purely a function of leverage – I have checked this myself by reading the data from the figure and performing a regression, which is very far from being significant if the year 2000 estimate is deleted. The more pertinent trend is that of increased productivity per nesting attempt as shown on page 171 of Crick & Siriwardena, which is consistent with a trend of increasing food availability related to improved summer weather conditions, especially warmer and drier summers, as indicated by the very similar trend emerging from the model of productivity versus weather conditions in Peach et al. (2008).

 

Your hypothesis that the relationship between Sparrowhawk establishment and the beginning of Sparrow decline is a function of an influx to gardens of species which (i) outcompete House Sparrows and (ii) attract Sparrowhawks, is ingenious and I would be intrigued to see you develop the idea. Which species do you think might be outcompeting House Sparrows for nest sites? Which species have flooded into gardens/outcompeted sparrows for food/proved irresistible to Sparrowhawks? Why has the influx of these species followed the same spatio-temporal pattern as Sparrowhawk recolonisation? I might also add that in order to factor in abundance of other species I should have needed access to the data, but since it took over a year to persuade the BTO to release the data for the two focal species I may well have still been waiting to begin the study you propose.

 

(2) You complain that the spatio-temporal correspondence of Sparrowhawk and House Sparrow is “not quite as clear as claimed,” and single out urban zones 2-4. You state that the similarity of House Sparrow trends in zones 2-4 differs from that which would be predicted by Sparrowhawk incidence because Newton’s data on the latter predict a sequence of zone 2 followed by zone 3 followed by zone 4. However, Newton did not differentiate urban and rural habitats, and you can only maintain your position by ignoring Figure 2B, which shows a very similar Sparrowhawk incidence function in urban zones 2&3, which parallels the similar trajectories of the corresponding Sparrow populations. Contrary to your assertion, we do not claim that there is a close correspondence between the two species in urban zone 4, and I would refer you to paragraph 3 of the discussion: “In the one instance in which it proved impossible to derive a close approximation of sparrow population trajectory from sparrowhawk incidence, that for urban sites in zone 4, the estimated trends for both species were based on data from only eight sites and so may not provide an accurate summary of the underlying trends.”

 

(3) You state that you are confused by the contrast between the results we present and those of Thomson et al. (1998), and Chamberlain et al. (2009). However we provide a comprehensive explanation for these differences, and you may find it rewarding to re-read paragraphs 4 & 5 of the discussion in this regard. The Thomson analysis uses raw Sparrowhawk presence and absence data as an explanatory variable, and we show how this can be misleading by demonstrating an apparent lack of relationship when it is applied to the GBFS dataset (top line Table 4). Chamberlain assumed continuous Sparrowhawk presence after the first appearance of the species at a site (which we refer to as the AP transition), and again we show how this can be misleading by demonstrating an apparent lack of relationship using this approach (top line Table 2, Figure 3). When these analyses are repeated using the PC transition (first year of continuous presence), strong relationships emerge between the two species in both analyses (bottom half of Table 4, Table 3/Figure 3).

 

You state that “the observed reductions in House Sparrow counts simply reflect an avoidance of gardens used a lot by Sparrowhawks.” However, both in the case of the spatio-temporal analysis (Figure 2), and the presence-absence analysis (Figure 3), Sparrowhawk incidence explains practically all of the variance in Sparrow numbers. Chamberlain et al. (2005) demonstrated a very high degree of correlation between GBFS and CBC indices for the House Sparrow, so If the decline in the former is attributed to avoidance, this must also apply to CBC, and you must therefore believe that there has been no population decline in the species? Furthermore, it is apparent from Figure 3 that the decline in House Sparrow numbers following Sparrowhawk appearance takes place gradually over a period of 15-20 years, which is the signature of a population process rather than a behavioural response which would be instantaneous, and produce a step change pattern in Figure 3.  Finally you are mistaken in referring to both Thomson and Chamberlain as looking at breeding populations, since Chamberlain uses GBFS data.

Reasons forwarded by the RSPB on 2/4/10

posted 13 Apr 2010 07:49 by Christopher Paul Bell   [ updated 14 Apr 2010 07:09 ]

This paper is a comprehensive analysis of the BTO’s long term (1970-2004) winter garden bird counts scheme – the Garden Bird Feeding Survey (GBFS). A recently published analysis using the same data, but a different method (Chamberlain et al. 2009), found no coincidence between the timing of house sparrow (HS) declines in gardens, and the timing of recolonization by sparrowhawks (SH). This new study has analysed the same data in a more sophisticated way. It has found that the timing of HS declines in gardens does coincide quite closely with the local establishment (rather than first arrival) of SHs.

 

This lends support to the assertion that HS population declines have been caused by the return of the SH to central and eastern Britain during the 1970s and 1980s. This paper is of general interest, as it is one of the first studies to provide evidence of possible impacts of SHs on songbirds.

 

The authors of the paper are to be congratulated on the rigorousness of their analyses.


The £5,000 prize offered by the Independent is for “a paper published in a peer-reviewed scientific journal which explains the disappearance of the house sparrow from Britain’s towns and cities.” On the basis of this paper, and other papers, I am not convinced that predation by sparrowhawks alone explains the house sparrow's disappearance. I have three main areas of reservation:

 

First, previously published studies have provided evidence that other factors are limiting HS numbers in Britain, and might well have contributed to the population decline. In particular, lack of seed and grain on farmland (Hole et al. 2002) has been shown experimentally to limit overwinter survival and to reduce local sparrow populations. Similarly, a lack of invertebrates in urban-suburban areas causes low reproductive success (Peach et al. 2008). Evidence from BTO nest record cards of declining average brood sizes in house sparrows is consistent with the hypothesis of declining invertebrate availability in towns and cities. It is a little strange that Bell at al. do not acknowledge either the Peach et al. study or the BTO nest record cards evidence.  More broadly, a general weakness of the Bell study is that it only addresses one candidate hypothesis to explain the HS decline. Had they considered other candidate causes, they might have found stronger relationships, or perhaps relationships that were confounded with the arrival of hawks (e.g. changes in the abundance of species that might compete with HS for nest sites or food, and perhaps attract hawks to gardens).

 

Second, the associations between HS and SH outlined by Bell et al. are not quite as clear as claimed. In particular, the timing and magnitude of the HS declines looks remarkably consistent across some regions, even though the timing of recovery of SH populations differed markedly. For example, the pattern of declines of urban HS in regions 2-4 are all very similar (Figure 2D). However, Newton's data on SH recovery would predict that HS declines should have happened in region 2 first, then 3, followed by 4 if SH predation was limiting HS numbers.

 

Third, and most importantly, I am aware of three other similar correlational studies, two published (Thomson et al 1998; Chamberlain et al 2009), and one in press, that come up with a different conclusion, i.e. no impact of sparrowhawks on house sparrow numbers. While Bell and his colleagues may argue that their analysis is more sophisticated, the presence of conflicting answers leaves the conservation practitioner confused. An inherent weakness of the Bell et al paper is that it only looks at wintering, rather than breeding populations of sparrows. It is possible, therefore, that the observed reductions in HS counts simply reflect an avoidance by HS of gardens used a lot by SHs. Both other studies that have looked at SH impacts on HS breeding populations have found no effect.

 

It is entirely possible that sparrowhawk predation has contributed to the decline of the house sparrow in Britain. However, given the conflicting evidence from correlational studies, I cannot conclude that sparrowhawk predation alone has caused the decline of the house sparrow. This paper does, however, increase the likelihood that SHs may be implicated in the decline of HSs, and provides justification for carefully planned field studies to look for such impacts. 

Rebuttal forwarded to the BTO 4/4/10

posted 13 Apr 2010 07:34 by Christopher Paul Bell   [ updated 14 Apr 2010 07:00 ]

(1) You devote more than a quarter of your review at point 1 to a refutation of the proposition that significant differences in sparrow population trends among the eight contingencies of region/rurality provide evidence of an effect of sparrowhawk predation. I’m afraid this is a straw man. We state quite explicitly that the pattern provides no such evidence, and the analysis referred to is merely a preliminary to the modelling exercise, which you refer to at point 2. For this exercise to be meaningful, it is first necessary to establish that there are statistically significant differences among the eight contingencies, otherwise we cannot be sure that there are any differences to explain.

 

You erroneously state that we are testing whether sparrow population trends “are more negative in areas which sparrowhawks have re-colonised and does this downward trend occur later”. As a population biologist, I am sure you are aware that there is no reason to assume such a simple pattern of variation between predator and prey among different regions and habitats, since the underlying dynamics of prey populations may vary, as does the temporal pattern of Sparrowhawk incidence among the eight contingencies. The fact that later declines in rural areas are not “startlingly obvious”, or that urban patterns are similar, is therefore supremely irrelevant.

 

(2) You state that you find the results of the simulation model unconvincing because there is no test of the probability of the observed model fit. You must be aware that this presents an intractable statistical problem, not least because we are attempting to predict the fitted values of one model using fitted values from another model. The fact that we have failed to do something that may well be impossible is not a valid criticism.

 

You state that the observed fit could be obtained for “simple mathematical reasons,” but you also state that it would have been better to employ a model with “greater biological realism.” You will be aware that increasing the number of parameters in the model makes it easier to fit to any observed data set, and that if the number of parameters is large enough a model can be fitted to any conceivable dataset ‘for mathematical reasons’. Your position appears to be that our model therefore has too many parameters to be plausible on mathematical grounds, but too few to be realistic on biological grounds. If you apply this consistently, you must surely regard the whole of population biology to be invalid?

 

The justification for the inference we draw from this model can be stated in quite straightforward terms.

·                     Rural Sparrows/Sparrowhawks in 1970-74 are ordered zone 4>3>2>1/zone 1>2>3>4.

·                     Sparrows/Sparrowhawks in rural zones 1 and 2 decline/increase in a linear and converging fashion.

·                     Sparrows/Sparrowhawks in rural zone 3 undergo a decline/increase that accelerates, then stablilizes.

·                     Sparrows/Sparrowhawks in rural zone 4 are increasing/absent, then stabilize/appear, then undergo an accelerating decrease/increase with a suggestion of stabilization at the end.

·                     Sparrows/Sparrowhawks in urban zone 1 are increasing/absent, stabilize/appear, then undergo an accelerating decrease/increase with no sign of stablilization.

·                     Sparrow/Sparrowhawk populations in urban zones 2 & 3 are initially stable/nearly absent, then decelerate/accelerate to a roughly linear decline/increase.

 

Urban zone 4 proves to be the exception. Sparrows vary in a similar fashion to those in urban zones 2-3, but Sparrowhawks appear to be absent for most of the data period, appearing in only a small proportion of sites at the end.  This is an exception that proves the rule, however. Unlike in urban zones 2-3, Sparrow numbers in urban zone 4 are statistically stable until the 1990s, and the Sparrowhawk trajectory in urban zone 4 is not significantly different from that in urban zone 3. The lack of fit therefore does no damage to the model, but skewers the proposition that the good overall fit represents a mathematical artifact by demonstrating how very easy it is for best fit trajectories to vary in a fashion that cannot possibly be reproduced by the model.

 

The statistical models for the two species are completely independent, and the proposition that the correspondence of the varied trajectories shown by the two species in 7 out of eight contingencies is likely to have occurred by chance is simply and plainly untenable. On a purely instrumental level, any alternative causal factor would have to be at least an equally good predictor of sparrow population trends. If the BTO/RSPB explanation of a complex interaction of agricultural/urban development variables is preferred it would have to provide a very much better explanation of variance in sparrow numbers, which is clearly highly unlikely. If you are consistent therefore, you will never find any explanation acceptable.

 

(3) You erroneously state that there is no information on ‘geographical spread’ of the sites in the analysis shown in Figure 3 and Table 3. Though you do not say so clearly, you are attempting to imply that the superiority of PC-centred time over chronological time as an explanatory variable is an artifact of an underlying correlation of PC transitions with an unknown causal factor with an E-W gradient.  However in the same breath you acknowledge that this is unlikely to be the case, because the wished for information on geographic spread is indeed incorporated in the analysis, which shows that the relationship holds within each of the four geographic zones. Your complaint that there is no analysis of urban rural gradient is spurious, since only a handful of the 54 sites with a PC transition were urban, rendering such an analysis meaningless.

 

(4) You complain that the analysis in table 4, which implements a modified application of the approach in Thomson et al. 1998, does not differentiate urban and rural. As above, this carries no weight because of the small number of urban sites available in the PC transition sample. Even were this not the case we would not have factored in rurality, since our objective was to follow Thomson, who did not differentiate habitats, in order to demonstrate the drawbacks in his approach.

 

You state that the results do not reliably reflect an effect of Sparrowhawks on Sparrow population size, since Sparrows could be merely avoiding gardens where Sparrowhawks occur. There are two important problems with this argument. Firstly, figure 3 indicates that there is no evidence of Sparrow decline prior to the establishment of Sparrowhawks, and that the decline can be explained in its entirety by Sparrowhawk presence. If this is explicable in terms of avoidance, it follows that there has been no ‘real’ decline in Sparrow numbers, which we know not to be true.  Secondly, there is a steady decline in Sparrow numbers over a period of almost 20 years following Sparrowhawk establishment. Do you really maintain that Sparrows react to the appearance of a predator by gradually drifting away from a feeding station over a period of two decades? Do you not think instead that the signature of a behavioural response would be an abrupt step-down in numbers at the PC transition?

 

You state that no inferences can be drawn about the effects of Sparrowhawk predation without accounting for variation in nest site and food availability. The difficulty of quantifying these two variables means that you effectively insure yourself via this argument from ever having to concede the significance of Sparrowhawk predation. Even if such quantification were possible, you could logically fall back on the need to account for weather, disease, parasites, atmospheric pollution, competitors or any other conceivably relevant variable. Indeed, your position applied consistently would prevent you from ever drawing inferences from any ecological study.

 

Finally, here are some quotes from papers published previously by the BTO:

 

Thomson et al. (1998) demonstrated that between-year changes in abundance of a wide range of bird species on CBC plots were not related to the presence or absence of Sparrowhawks on the census plots. Unfortunately, this study did not include House Sparrow, and it would be a useful exercise to repeat this type of analysis for House Sparrow and to perhaps to (sic) undertake a similar study using data from GBFS gardens.” (From Crick, Robinson & Siriwardena 2002, p279).

 

“GBFS is likely to be useful in monitoring species that are associated especially with human habitations and which show a marked population change (e.g. declining Starling and House Sparrow).” (From Chamberlain, Vickery, Glue, Robinson et al. (2005), which also reports a correlation of 0.967 between GBFS and CBC data for House Sparrow over the period 1970-2000).

 

We have performed the analysis suggested by you in the first quote, which comes from a paper discussing the potential causes of Sparrow decline. Why do you now consider the results to be unreliable? When did you resile from the opinion you express in the second quote, and what level of correlation between GBFS and CBC would be required to ‘make the link’ between numbers in gardens and population size?

Reasons forwarded by the BTO on 29/3/10

posted 13 Apr 2010 07:27 by Christopher Paul Bell   [ updated 13 Apr 2010 07:40 ]

Using large scale data from the BTO's long-running Garden Bird Feeding Survey, Bell et al seek to address the  question: have sparrowhawks had a negative effect on sparrow populations? They address this using four different approaches

(1) In geographic regions with different histories of sparrowhawk numbers (primarily constrasting areas where sparrowhawks remained through the 70s and early 80s with areas that they have recolonised) do sparrows in urban and rural areas show different population trends, specifically are they more negative in areas which sparrowhawks have recolonised and does this downward trend occur later?

Fig 2B shows that sparrow numbers in rural gardens appear to decline later in the area where sparrowhawks colonised later though the difference is not startlingly obvious from the graph presented and the pattern is tested in a rather roundabout fashion. In contrast for urban areas (Fig 2C), there seems to be much more similarity in the pattern of declines across zones, though the authors attribute this sparrowhawks colonising urban areas (an unspecified amount of time) later. As the authors acknowledge this is quite weak evidence of the impact of sparrowhawks on sparrow populations (other variables may be expected to covary in a similar manner) and although the evidence is consistent with the hypothesis that sparrowhawks influence sparrow numbers the pattern is perhaps not as clear-cut as might be hoped for.

(2) Given a simple population model, can the broad population trajectory of sparrows be modelled by the presence of sparrowhawks alone.


In principle this approach is a good way to address the question and although its results are consistent with the  hypothesis I am not overly convinced it provides a strong test especially in the absence of any formal testing of model fit. In particular the maximisation approach taken could produce an apparently good fit for simple mathematical reasons. It would have been much better (though admittedly probably harder) to have employed a model with greater biological realism.

(3) Considering individual sites do sparrow numbers decline when sparrowhawks become present at a site, either intermittently or continuously?

Fig 3 shows that sparrow numbers prior to continuous sparrowhawk presence are high and relatively stable (over a 10-15 year time-scale) and following permanent colonisation (but not intermittent presence) of gardens by sparrowhawks sparrow numbers do decline in the following 10-15 years. On the
face of it this does provide some evidence that sparrowhawks negatively influence numbers, I would, however, like to see some infomation on geographical spread of sites relative to sparrowhawk colonisation as eastern sites may be colonised later, allowing the possibility that another geographically differentiated variable could confound the results (though the pattern does seem consistent across zones, Table 3). They do not differentiate between rural and urban gardens in this analysis.

(4) Is the annual change in observed sparrow numbers at a site related to the presence of sparrowhawks at that site in that year?

Table 4 shows that sites with sparrowhawks present in a particular year do seem to show a more negative population change between that and the following year, although again urban and rural gardens are not differentiated.

The paper was submitted in response to the following challenge: “a paper published in a peer-reviewed scientific journal which in the opinion of our referees explains the disappearance of the house sparrow from Britain’s towns and cities.”

As one of the world's most prestigious ornithological journals, The Auk clearly counts as a peer-reviewed journal. Overall, although (1) and (2) are broadly consistent with the hypothesis, I did not find them convincing; (3) and (4), however, do provide persuasive (rather than compelling) evidence that sparrowhawks influence sparrow numbers in gardens. However, the link has not been made between numbers in gardens and population size. It could, for example, be that sparrows merely avoid gardens where they are likely to encounter sparrowhawks. In order to answer the question, I feel it would be
necessary not only to make this link but also to discount (or at least quantify the relative importance of) other drivers, such as changes in nest site and food availability.

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